Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015842119.1_cds_XP_016508256.1_21297
CDS Infomation

[gene=LOC107825856] [db_xref=GeneID:107825856] [protein=ATP-dependent DNA helicase DDM1-like] [protein_id=XP_016508256.1] [location=join(75437..75493,76335..76598,76695..76781,77150..77496,77645..77834,77971..78146,78716..78785,78929..79118,79570..79665,79748..79842,79928..80047,80741..80860,81160..81258,81335..81442,81789..82028)] [gbkey=CDS]
Sequence

ATGGTGGCCAACGACAAGACAGCTTCGGACTCTCCTGTTTCCGTCCTGGAAGATGAGGAT
ACCTGCAAAGAGGAGCCCGCCATTAAATTGGAGGAAGTAGTTTGTGATGCTGAAAATGAG
GATGTCACTCATATACCTGAATCCATGGAGGAGGAAGGAATTCTGAGAAAAGCATGTGCA
AAGGAGGAAGAGGCACAATTAAATGAGCTCAAGCAGGCGCCCAGTTTGAATGAAACTCAA
TTTACCAAGTTGGATGAGCTTCTTACCCAGACACAACTTTATTCAGAGTTCTTGCTGGAG
AATATGGATAACATCAATATGAATCAGATAGAAGGTGAAGAGAAAAGTGTCAATGAAAAC
AAAAGAGGCCGTGGCTCGAAACGAAAGCCGACAACAGGCTACAACAATAGGAAAGCCAAG
AGAGCTGTTGCTGCCATGCTTACAAGATCTAAAGAAGATGTTTCAAATGAAGATTCAACC
CTCACGGAGGAAGAGAGAGTCGAGAGAGAGCAGGCCGAACTTGTGCCCTTGCTGACTGGT
GGGAAATTGAAATCTTATCAACTGAAAGGTGTCAAGTGGTTGATCTCATTATGGCAAAAT
GGATTGAATGGTATCCTAGCAGATCAAATGGGACTTGGAAAGACAATTCAAACAATAGCT
TTTCTTGCTCATTTGAAGGGGAATGGTTTGGATGGCCCTTATTTGGTCATTGCTCCTTTG
TCTACACTTTCAAATTGGTTGAATGAGATAGAGAGGTTTGTGCCCTCAATCAATGCAATC
ATCTACCATGGTGACAAGAATCAGAGGGATGAGATAAGGATGAAGCACTTGCCGAGGACC
ATAGGTCCCAAATTTCCCATTGTAATTACTTCTTATGAAGTTGCATTAAGTGATGCAAGG
AAGTGCCTGAGGCACTACAGTTGGAAATATCTTGTGGTGGATGAGGGGCATAGGTTAAAG
AACTCAAAATGCAAATTGTTCAAAGAATTGAAGCTGTTGCCCATTGAAAACAAGCTCCTT
TTAACTGGAACACCTCTGCATAATAACTTAGCTGAGCTGTGGTCCTTGTTGAACTTCATT
TTACCGGACATATTCTCTTCCCACGATGAATTTGAGTCATGGTTTGATCTATCGGGGAAG
TGCACCACTGAATCAGAAAAGGAAGAAATGGAAGAAAAGAGGAGAGCACAAGTTGTGGCC
AAACTCCATGCAATATTACGTCCTTTTCTTCTACGGAGGATGAAAGTGGATGTTGAGCAA
ATGCTTCCTCGTAAGAAGGAGATAATATTGTATGCTACCATGACTGAATACCAGAAAAAG
TTCCAGGAACACCTAATTAATAGGACACTGGAGGGCTATTTGATTGAGAATGTGTCCACT
GGGCATGGTTTTAAAGGAAAGCTTAATAATTTGATGGTTCAACTTCGCAAGAATTGCAAC
CATCCTGATCTCTTGGAGTCCGTCTTCAACGGTTCTCCTCTTTATCCACCTGTGGAACAA
ATAATTGAGCAATGTGGCAAGTTTATTTTGCTGGACAGACTGTTAACAAAACTGTTTGCT
CGCAAGCACAAGGTTCTGATATTCTCTCAGTGGACTAGAGTACTGGACATAATGCACTAT
TATTTTAGTGAAAAAGGATTCGATGTTTGTAGGCTTGATGGCAGTGTGAAATTGGACGAA
AGAAAAAGACAGATCAAGGAGTTCAATGATGTTAGCAGCAAGTACAGGATATTTCTTCTT
AGTACTAGAGCTGGTGGCCTTGGTATCAATCTGACTGCTGCTGATACCTGTATTTTATAT
GATAGTGATTGGAATCCTCAAATGGATCTACAGGCAATGGATCGGTGTCATAGAATTGGT
CAGACCAAACCTGTTCATGTTTACAGGCTTTCCACAGCTTTGTCTGTGGAGGGTCGAATC
CTCAAAAGAGCTTTTAGCAAGTTGAAGCTTGAGCAGGTGGTAATCGGGAAAGGACAATTT
AAGCAAGAAAGAAGCAAACCTTCCATGGATGTTATGGAGGAGGAGGACTTGTTGGCTCTC
ATGAGAGATCAAGATAGTGAGGAGGACAAGTTGGTGCAGACAGATGTCACAGATGAAGAT
CTGGAGAGGATTTTAGACCGTAGTGATCTAGTTGTTGGTCCTTCAAGTGAGGATGGGAAC
ACTGAATCATGTGTTAGTGTGCTTCCTCTCAAAGGACCTGGTTGGGAAGTAGTTATTCCA
ACTGCAACTGGAGGCGTGCTTTCCACCCTCAACAGCTGA

Peptide Sequence

PEP ID

XP_016508256.1
PEP Infomation

PREDICTED: ATP-dependent DNA helicase DDM1-like [Nicotiana tabacum]
Sequence

MVANDKTASDSPVSVLEDEDTCKEEPAIKLEEVVCDAENEDVTHIPESMEEEGILRKACA
KEEEAQLNELKQAPSLNETQFTKLDELLTQTQLYSEFLLENMDNINMNQIEGEEKSVNEN
KRGRGSKRKPTTGYNNRKAKRAVAAMLTRSKEDVSNEDSTLTEEERVEREQAELVPLLTG
GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLDGPYLVIAPL
STLSNWLNEIERFVPSINAIIYHGDKNQRDEIRMKHLPRTIGPKFPIVITSYEVALSDAR
KCLRHYSWKYLVVDEGHRLKNSKCKLFKELKLLPIENKLLLTGTPLHNNLAELWSLLNFI
LPDIFSSHDEFESWFDLSGKCTTESEKEEMEEKRRAQVVAKLHAILRPFLLRRMKVDVEQ
MLPRKKEIILYATMTEYQKKFQEHLINRTLEGYLIENVSTGHGFKGKLNNLMVQLRKNCN
HPDLLESVFNGSPLYPPVEQIIEQCGKFILLDRLLTKLFARKHKVLIFSQWTRVLDIMHY
YFSEKGFDVCRLDGSVKLDERKRQIKEFNDVSSKYRIFLLSTRAGGLGINLTAADTCILY
DSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTALSVEGRILKRAFSKLKLEQVVIGKGQF
KQERSKPSMDVMEEEDLLALMRDQDSEEDKLVQTDVTDEDLERILDRSDLVVGPSSEDGN
TESCVSVLPLKGPGWEVVIPTATGGVLSTLNS

Transcript Sequence

Gene sequence data has not been registered.